| 1 | 2000 | Gran Premio Marlboro de España | 46 | Nastro Azzurro Honda | Honda NSR | Honda V4 | 2 | 3 |
| 2 | 2000 | Grand Prix Polini de France | 46 | Nastro Azzurro Honda | Honda NSR | Honda V4 | 10 | 3 |
| 3 | 2000 | Gran Premi Marlboro de Catalunya | 46 | Nastro Azzurro Honda | Honda NSR | Honda V4 | 9 | 3 |
| 4 | 2000 | GP Marlboro de Portugal | 46 | Nastro Azzurro Honda | Honda NSR | Honda V4 | 12 | 3 |
| 5 | 2000 | Qantas Australian Grand Prix | 46 | Nastro Azzurro Honda | Honda NSR | Honda V4 | 8 | 3 |
| 6 | 2001 | Grand Prix Polini de France | 46 | Nastro Azzurro Honda | Honda NSR | Honda V4 | 3 | 3 |
| 7 | 2003 | Gauloises Dutch TT | 46 | Repsol Honda Team | Honda RC211V | Honda V5 | 3 | 3 |
| 8 | 2003 | Cinzano British Grand Prix | 46 | Repsol Honda Team | Honda RC211V | Honda V5 | 4 | 3 |
| 9 | 2005 | Red Bull U.S. Grand Prix | 46 | Gauloises Yamaha Team | Yamaha YZR-M1 | Yamaha S4 | 2 | 3 |
| 10 | 2005 | Gran Premio betandwin.com de la Comunitat Valenciana | 46 | Yamaha Factory Racing Team | Yamaha YZR-M1 | Yamaha | 15 | 3 |
| 11 | 2006 | GMC Australian Grand Prix | 46 | Yamaha Factory Racing Team | Yamaha YZR-M1 | Yamaha | 3 | 3 |
| 12 | 2007 | GMC Australian Grand Prix | 46 | Yamaha Factory Racing Team | Yamaha YZR-M1 | Yamaha | 2 | 3 |
| 13 | 2008 | bwin.com Grande Prémio de Portugal | 46 | Yamaha Factory Racing Team | Yamaha YZR-M1 | Yamaha | 3 | 3 |
| 14 | 2008 | Gran Premio Parts Europe de la Comunitat Valenciana | 46 | Yamaha Factory Racing Team | Yamaha YZR-M1 | Yamaha | 10 | 3 |
| 15 | 2009 | Gran Premio d''Italia Alice | 46 | Yamaha Factory Racing Team | Yamaha YZR-M1 | Yamaha | 4 | 3 |
| 16 | 2009 | Shell Advance Malaysian Motorcycle Grand Prix | 46 | Yamaha Factory Racing Team | Yamaha YZR-M1 | Yamaha | 1 | 3 |
| 17 | 2010 | Gran Premio bwin de España | 46 | Yamaha Factory Racing Team | Yamaha YZR-M1 | Yamaha | 4 | 3 |
| 18 | 2010 | Red Bull U.S. Grand Prix | 46 | Yamaha Factory Racing Team | Yamaha YZR-M1 | Yamaha | 6 | 3 |
| 19 | 2010 | GP Aperol di San Marino e Riviera di Rimini | 46 | Yamaha Factory Racing Team | Yamaha YZR-M1 | Yamaha | 4 | 3 |
| 20 | 2010 | Grand Prix of Japan | 46 | Yamaha Factory Racing Team | Yamaha YZR-M1 | Yamaha | 2 | 3 |
| 21 | 2010 | Iveco Australian Grand Prix | 46 | Yamaha Factory Racing Team | Yamaha YZR-M1 | Yamaha | 8 | 3 |
| 22 | 2010 | GP Generali de la Comunitat Valenciana | 46 | Yamaha Factory Racing Team | Yamaha YZR-M1 | Yamaha | 4 | 3 |
| 23 | 2011 | Monster Energy Grand Prix de France | 46 | Ducati Team | Ducati | Ducati | 9 | 3 |
| 24 | 2013 | German Grand Prix | 46 | Yamaha Factory Racing Team | Yamaha YZR-M1 | Yamaha | 3 | 3 |
| 25 | 2013 | United States Grand Prix | 46 | Yamaha Factory Racing Team | Yamaha YZR-M1 | Yamaha | 4 | 3 |
